Sandbox: Difference between revisions

From ChanceWiki
Jump to navigation Jump to search
Line 98: Line 98:
Two-Sample T-Test and CI
Two-Sample T-Test and CI


<table width="43%" border="1">
<center><table width="43%" border="1">
   <tr>  
   <tr>  
     <td width="17%"><div align="center">Sample</div></td>
     <td width="17%"><div align="center">Sample</div></td>
Line 121: Line 121:
   </tr>
   </tr>
</table>
</table>
</center>


Difference = mu (1) - mu (2)
Difference = mu (1) - mu (2)

Revision as of 16:29, 17 December 2007

Of Mice and Males

Authors are not responsible for what journalists write about a research article. Lacking knowledge of statistics, reporters tend to act like stenographers when they aren't extrapolating far beyond the limits of the research. Take a look at what the lay press had to say about "Experimental alteration of litter sex ratios in a mammal" which appeared in the Proceedings of the Royal Society (B).

The Daily Mail:

Red meat and salty snacks are said to lead to boys while chocolate is thought to help to produce girls. Now science suggests the stories may be true: mice with low blood-sugar levels - a good indicator of a sugar-rich diet - produce more female than male offspring.

The Independent:

Boy or girl? Battle of the sexes Are you desperate for a daughter or dying for a son? The solution could lie in a mother's diet - before she even conceives.

New Scientist:

Findings lend credence to traditional beliefs that eating certain foods can influence the sex of offspring.

Discover:

The Biology of . . . Sex Ratios. Want a boy at all costs? The secret may lie in your glucose levels.

FoxNews.com:

Can what a mother-to-be eats influence the sex of her unborn baby? Maybe, says new research.

The research itself looks at a very important issue in biology: the influence of nutrition on reproductive strategy and the ensuing evolutionary advantage. To carry out their research, they had 20 female mice in a control group and 20 female mice in the treatment group which was given "a steroid [DEX] that inhibits glucose transport and reduces plasma glucose concentrations." The original paper does not give a table whereby for each of the 40 mice is recorded the number in the litter, number of males and which arm of the study it was in. Instead, we have to relay on the given summary data: average litter size for control is 10.45 with a standard error of .60, and the average litter size for the treatment is 9.17 with a standard error of .62.

According to the article, "The sex ratio differed significantly between the treatment and control groups (rank-sum test: Z= -2.18, p=0.03), with DEX females giving birth to fewer sons (41.9%) than control females (53.5%)." With this information, it would appear that the control group produced a total of 10.45 * 20 = 209 mice resulting in 209*.535 = 112 males. The treatment group is more difficult to determine because two of the 18 "failed to conceive;" thus, if only 18 are relevant, then the treatment group has 9.17 * 18 = 165 mice and 165 * .419 = 69 males. Using these numbers, a Minitab printout yields a (Fisher exact because of the relatively small samples) p-value of .029 which is close to the "p=.03" mentioned in the article.

Test and CI for Two Proportions

Sample
X
N
Sample p
1
112
209
.0.535885
2
69
165
0.418182

Difference = p (1) - p (2)

Estimate for difference: 0.117703

95% CI for difference: (0.0165306, 0.218876)

Test for difference = 0 (vs not = 0): Z = 2.28 P-Value = 0.023

Fisher's exact test: P-Value = 0.029

Discussion

1. No confidence interval for the difference in proportion of males is given in the article itself. Does the 95% CI suggest any guarantee for reduction in male mice? Male humans?

2. Regarding the treatment arm, the article states : "42%, two-tailed binomial test, p=.04." Using the summary data, Minitab reports

Test and CI for One Proportion

Test of p = 0.5 vs p not = 0.5

Sample
X
N
Sample p
95% CI
p-Value
1
69
165
0.418182
0.341979
0.497378

</center.

Does this 95% CI suggest any guarantee for reduction in the number of male mice? Male humans?

3. Thus far, offspring production has been treated as a Bernoulli process. That is, each offspring is considered to be independent. In other words, no use has been made of the number of female parents (20 in the control and 18 in the treatment arm). Using the summary data given in the article, Minitab obtains for the difference in means of males a somewhat different p-value, .05 rather than the .03 mentioned in the article and thus a wider interval.

Two-Sample T-Test and CI

Sample
N
Mean
StDev
SE Mean
1
20
5.59
2.68
0.60
2
18
3.84
2.63
0.62

Difference = mu (1) - mu (2)

Estimate for difference: 1.750

95% CI for difference: (-0.000, 3.500)

T-Test of difference = 0 (vs not =): T-Value = 2.03 P-Value = 0.050 DF = 35

Ask a biologist whether or not the Bernoulli assumption is valid.

4. All of the above is from a frequentist point of view. What would Baysians add to the discussion and why?

5. As noted, two of the 18 in the treatment arm failed to conceive while all 20 in the control arm did conceive. How does this affect your view of the results?

Submitted by Paul Alper