Chance News 111: Difference between revisions

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Submitted by Bill Peterson
Submitted by Bill Peterson
==Birthday cake bacteria==
Coincidentally, on the subject of birthdays (not voting!), Paul Alper sent a link to the following paper:
:[http://www.ccsenet.org/journal/index.php/jfr/article/view/67217 Bacterial transfer associated with blowing out candles on a birthday cake]<br>
:''Journal of Food Research'', Vol 6, No 4 (2017)
The abstract is reproduced below:
<blockquote>
This study examined the potential spread of bacteria when blowing out candles on a birthday cake. Preliminary tests of blowing on nutrient agar indicated that bioaerosols in human breath expelled from the mouth may be a source of bacteria transferred to cake surfaces. To test aerosol transfer to cake, icing was spread evenly over foil then birthday candles were placed through the foil into a Styrofoam™ base. '''After consuming pizza''', test subjects were asked to extinguish the candles by blowing. Icing samples were sterilely recovered then surface plated, to determine the level of bacterial contamination. Blowing out the candles over the icing surface resulted in '''1400% more bacteria compared to icing not blown on'''. Due to the transfer of oral bacteria to icing by blowing out birthday candles, the transfer of bacteria and other microorganisms from the respiratory tract of a person blowing out candles to food consumed by others is likely. (Paul's emphasis)
</blockquote>
As Paul notes, a number of questions immediately suggest themselves, not least of which is the elephant in the party hat: What's pizza got to do with it? 
'''Discussion'''<br>
What questions occur to you based on the abstract?  To what extent are they dealt with in the [http://www.ccsenet.org/journal/index.php/jfr/article/view/67217/37099 full paper] (5 pages).


==Surprise ER bills==
==Surprise ER bills==
Line 283: Line 300:


Submitted by Bill Peterson
Submitted by Bill Peterson
==Birthday cake bacteria==
Paul Alper sent a link to the following paper:
:[http://www.ccsenet.org/journal/index.php/jfr/article/view/67217 Bacterial transfer associated with blowing out candles on a birthday cake]<br>
:''Journal of Food Research'', Vol 6, No 4 (2017)
The abstract is reproduced below:
<blockquote>
This study examined the potential spread of bacteria when blowing out candles on a birthday cake. Preliminary tests of blowing on nutrient agar indicated that bioaerosols in human breath expelled from the mouth may be a source of bacteria transferred to cake surfaces. To test aerosol transfer to cake, icing was spread evenly over foil then birthday candles were placed through the foil into a Styrofoam™ base. '''After consuming pizza''', test subjects were asked to extinguish the candles by blowing. Icing samples were sterilely recovered then surface plated, to determine the level of bacterial contamination. Blowing out the candles over the icing surface resulted in '''1400% more bacteria compared to icing not blown on'''. Due to the transfer of oral bacteria to icing by blowing out birthday candles, the transfer of bacteria and other microorganisms from the respiratory tract of a person blowing out candles to food consumed by others is likely. (Paul's emphasis)
</blockquote>
As Paul notes, a number of questions immediately suggest themselves, not least of which is the elephant in the party hat: What's pizza got to do with it? 
'''Discussion'''<br>
What questions occur to you based on the abstract?  To what extent are they dealt with in the [http://www.ccsenet.org/journal/index.php/jfr/article/view/67217/37099 full paper] (5 pages).

Revision as of 14:14, 23 August 2017

July 1, 2017 to August 20, 2017

Quotations

“In my darkest moods I follow what could be called the ‘Groucho principle’: because stories have gone through so many filters that encourage distortion and selection, the very fact that I am hearing a claim based on statistics is reason to disbelieve it.”

-- David Spiegelhalter (president of Royal Statistical Society), quoted in:
'Exaggerations' threaten public trust in science, says leading statistician, Guardian, 28 June 2017

"Aside from ruining the rest of the 21st century, the 2016 U.S. election inflicted spectacular collateral damage on the subject known as statistics."

-- Paul Alper, in: Occom, Mencken and Cohn, Higher Education Review, vol. 49, no.2

"Indeed, the statistician David Freedman used to say that if the topic of regression comes up in a criminal or civil trial, the side that must explain regression to the jury will lose the case."

-- Daniel Kahneman, in: Thinking, Fast and Slow (Farrar, Straus, and Giroux, 2013), p. 182.

Forsooth

COLONEL [Buzz] ALDRIN: Infinity and beyond. (Laughter.)

THE PRESIDENT: This is infinity here. It could be infinity. We don’t really don’t know. But it could be. It has to be something -- but it could be infinity, right?

Okay. (Applause.)

in: Remarks by the President signing an Executive Order on the National Space Council
Office of the White House Press Secretary, 30 June 2017.

Suggested by Mike Olinick


Do we have to?

Hilton-pie.jpg

Photo by Pete Schumer, taken in the elevator at his hotel.


Too much precision!

"By 2025, the [National Funeral Directors] Association is forecasting that 63.8 percent of the people who die in the United States will be cremated, and by 2035, 78.8 percent."

in: In a move away from tradition, cremations increase, New York Times, 10 August 2017

Submitted by Paul Alper

"Random" seat assignment

Ryanair's 'random' seat allocation not random — scientists
by John von Radowitz, Irish Independent, 30 June 2017

Ryanair is an Irish low-cost airline. This Wikipedia entry reports that they have repeatedly faced criticism for misleading advertising.

The Irish Independent article concerns a recent controversy. When customers book Ryanair flights, they can pay to make a seat selection or else opt for "random" seat assignment, which is free. Advertising on the airline's website says, "Can't stand the middle seat? Don't leave it to chance, take your pick from a choice of seats. Get up to 50pc off reserved seats with prices starting at £2."

But is it up to chance? In light of customer complaints, the BBC consumer affairs show Watchdog sought expert opinion from Oxford University. To test the claim, researchers had four groups of four passengers book travel on four separate flights, all under the random seating option. On every flight, all of the passengers got middle seats. The odds of this happening were estimated at about 1:540,000,000, much longer than the 1:45,000,000 odds of winning the UK National Lottery jackpot. The director of Oxford University's Statistical Consultancy, Dr. Jennifer Rogers, is quoted as saying, "This is a highly controversial topic and my analysis cast doubt on whether Ryanair's seat allocation can be purely random."

The article concludes with the following explanation from Ryanair, which qualifies as an extended Forsooth!

We haven't changed the random seat allocation policy.

The reason for more middle seats being allocated is that more and more passengers are taking our reserved seats (from just £2) and these passengers overwhelmingly prefer aisle and window seats which is why people who choose random (free of charge) seats are more likely to be allocated middle seats.

Some random seat passengers are confused by the appearance of empty seats beside them when they check-in up to four days prior to departure.

The reason they can't have these window or aisle seats is that these are more likely to be selected by reserved seat passengers, many of whom only check in 24 hours prior to departure.

Since our current load factor is 95pc, we have to keep these window and aisle seats free to facilitate those customers who are willing to pay (from £2) for them.

Submitted by Patrick O'Beirne

Sense and Sensibility and Statistics

From The Word Choices That Explain Why Jane Austen Endures
by Kathleen A. Flynn and Josh Katz, New York Times, 6 July 6, 2017.

Jane Austen' popularity has endured, and there may be something in her language that explains this. A principal components analysis of the words used by a large number books published from 1701 t0 1920 show that Austen's novels were unusual in her use of words related to time (always, fortnight and week) or emotion (awkward, decided, dislike, glad, sorry, suppose).

Jane Austen also uses a large number of intensifying words: quite, really, and very. These words are normally avoided by authors, but Austen uses them to develop a sense of irony. This fits in well with some non-statistical assessments.

Traditional literary approaches to Austen have long focused on this aspect of her work: “the incongruities between pretence and essence, between the large idea and the inadequate ego," as the critic Marvin Mudrick put it. A look at passages where words like very are used frequently often finds the stated meaning conceivably at odds with the real one, the exaggeration subtly inviting doubt."

A nice interactive plot shows the first two principal components and you can hover over individual data points to see the book title.

Submitted by Steve Simon

Followup

Charting Literary Greatness With Jane Austen
by Kathleen A. Flynn, New York Times "Times Insider", 15 July 2017

Flynn, one of the authors of the above article, describes on how the Austen project arose. Of the quantitative approach, she writes

To reduce words to data points is not to diminish the power of choosing the right ones and putting them in the right order; there’s magic in fiction’s ability to explore universal human truths. But a discipline like statistics can offer a new and amusing — even instructive — look at something as intuitive and artistic as a novel, and that’s exciting, too.

The aritcle provides links to other data-analytic studies of literature. For example, scholars at University of Nebraska-Lincoln have computed word frequencies for all of Austen's works, while the Stanford Literacy Project has applied "computational criticism" to a wide range of literary analyses.

Do the stats!

Statistical errors are often not due to mathematical errors
by Brian Zaharatos, letter to the editor, Chronicle of Higher Education, 11 July 2017

Zaharatos writes in response to a June 28 article from the Chronicle, entitled A new theory on how researchers can solve the reproducibility crisis: Do the math. While acknowledging some good points raised in the article, he notes that it also misinterprets several statistical concepts, as in this faulty description of significance:

[F]or a p-value of 0.05…a study’s finding will be deemed significant if researchers identify a 95-percent chance that it is genuine.

Regarding the headline, notes that people's difficulties interpreting statistical studies are not purely mathematical: "Mathematical skills are necessary for success in statistics, but they are far from sufficient. Statisticians — and researchers using statistics — ought to have a nuanced understanding of the concepts that mathematics helps them quantify."

Gerrymandering

Partisan gerrymandering has benefited the GOP, analysis shows
NBCnews.com, 25 June 2017

Republican electoral gains in 2010 gave the party substantial control over the redistricting that followed the 2010 Census. NBC reports on a statistical analysis by the Associated Press showing the effect in subsequent elections and the state and national levels. For example, in the 2016 election, they estimate that Republicans won approximately 22 more seats in the US House of Representatives than they would have been obtained if representation was proportional to vote share. The AP website reports that Texas had the largest gain, nearly 4 extra seats.

Gerrymandering is of course nothing new. The reference to Texas brought to mind a famous story, retold in a 2002 story from the Economist (How to rig an election, 25 April 2002): "[It] used to be said of the old Texas 6th (which was a road from Houston to Dallas), that you could kill most of the constituents by driving down the road with the car doors open."

However, the latest efforts are seen as particularly egregious. We read,

The AP’s analysis was based on an “efficiency gap” formula developed by University of Chicago law professor Nick Stephanopoulos and Eric McGhee, a researcher at the nonpartisan Public Policy Institute of California. Their mathematical model was cited last fall as “corroborative evidence” by a federal appeals court panel that struck down Wisconsin’s Assembly districts as an intentional partisan gerrymander in violation of Democratic voters’ rights to representation. The U.S. Supreme Court has agreed to hear an appeal.

Stephanopoulos and McGhee computed efficiency gaps for four decades of congressional and state House races starting in 1972, concluding the pro-Republican maps enacted after the 2010 Census resulted in “the most extreme gerrymanders in modern history.”

Here is how Stephanopoulos explained the efficiency gap idea in a 2014 article, Here's how we can end gerrymandering once and for all (New Republic, 2 July 2014):

The efficiency gap is simply the difference between the parties’ respective wasted votes in an election, divided by the total number of votes cast. Wasted votes are ballots that don’t contribute to victory for candidates, and they come in two forms: lost votes cast for candidates who are defeated, and surplus votes cast for winning candidates but in excess of what they needed to prevail. When a party gerrymanders a state, it tries to maximize the wasted votes for the opposing party while minimizing its own, thus producing a large efficiency gap. In a state with perfect partisan symmetry, both parties would have the same number of wasted votes.

NBC news also cites another analysis approach, introduced by the Princeton University Gerrymandering Project, launched this year by Sam Wang. In the inaugural post we read that, according to their analysis, "the extreme Republican advantages in some states were no fluke. The Republican edge in Michigan's state House districts had only a 1-in-16,000 probability of occurring by chance; in Wisconsin's Assembly districts, there was a mere 1-in-60,000 likelihood of it happening randomly."

The FAQ on the Princeton Project site has a description of how the tests work.

Discussion
The figures quoted in the next to last paragraph are not "the probability of [the resulting advantage] occurring by chance." Why? How would you rewrite the statement?

Submitted by Bill Peterson

More on mortality

Further criticism of social scientists and journalists jumping to conclusions based on mortality trends
by Andrew Gelman, "Statistical Modeling, Causal Inference, and Social Science" blog, 11 July 2017

In Deaths of despair from the last installment of Chance News, we described the Angus-Deaton work on middle-age mortality, including commentary by Gelman and others. In this latest post, Gelman includes links to some other articles suggested by his readers.

Gelman reiterates his support for the project, which he believe has raised important issues. But he notesthat the omission age-adjustment was strange, since "reporting trends in mortality rates without age adjusting is like reporting trends in nominal prices without adjusting for the consumer price index."

Gelman and collaborators have produced a wealth of graphics related to the story, which are packaged in another post, Easier-to-download graphs of age-adjusted mortality trends by sex, ethnicity, and age group.

Greece prosecutes former chief statistician

Greece’s troubling prosecution of its former chief statistician: Why Congress and State should speak up
by Barry D. Nussbaum and Katherine K. Wallman, Huffington Post, 7 July 2017

The authors of this op-ed are present and past presidents of the American Statistical Association. They describe how the former chief statistician of Greece, Andreas Georgiou, is being prosecuted for his reporting on the Greek national debt. The issue is not his work, which has actually produced a more accurate accounting, but rather the revelation that the debt is larger than previously understood, which will require stricter austerity measures. Nussbaum and Wallman call for US government officials to stress the need for transparent statistical data, and more generally to condemn attacks on science.

In the US, statisticians are not being prosecuted for their analyses. However, the Greek saga calls to mind how climate scientists have been subjected to harrassment. Indeed, in February Representative Lamar Smith (R-Texas), chair of House Science Committee, convened hearings dubiously titled “Making EPA Great Again”.

In another recent story, the director of the US Census Bureau John Thompson announced his resignation this May. During an interview with NPR, Could a census without a leader spell trouble In 2020? (NPR "Code Switch", 15 July 2017), Thompson expressed confidence that work at the bureau would continue its work without disruption. Some observers have expressed concern because the 2020 census is fast approaching. Allocation of funds for many federal programs is dependent on census data. The counts are also have implications for Congressional redistricting. The Trump adminstration has so far been slow at filling top jobs.

Submitted by Bill Peterson

ASA statement on Georgiou case

ASA August Member News reports that Georgiou has been convicted by an appeals court in Greece. Earlier this month, Georgiou delivered a presentation on National Governments, Coerced Narratives, Creative Language, and Alternative Facts at the Joint Statistical Meetings. The ASA has issued the following statement:

We were disturbed to learn this morning of the conviction of Andreas Georgiou, the former president of the Hellenic Statistical Authority (ELSTAT), on charges of violation of duty by an appeals court in Greece. Dr. Georgiou was acquitted of these charges in December 2015; the decision to retry him amounts to double-jeopardy. As noted in our March 27 letter to Alexis Tsipras, Prime Minister of the Hellenic Republic, “There is widespread agreement among statistical authorities that Dr. Georgiou compiled Greek public finance statistics in accordance with EU rules and standards, with which Greece is obliged to comply, and that the charges against him are baseless.” We reiterate the call that: “all remaining charges against Dr. Georgiou and his former colleagues be dropped immediately. Under no circumstances can criminal sanctions for developing and presenting independent and objective statistical data in a credible way be justified."

Still running against Hillary?

Paul Alper sent a link to the following article.

Trump can usually make it about a third of the way through an interview without mentioning Hillary Clinton
by Philip Bump, Washington Post, 21 July 2017

Political observers have noted that President Trump thrives on campaign-style events, and that his communications regularly lapse into campaign rhetoric. The Post presents a quantitative analysis of how often Trump invokes the name of his 2016 opponent, Hillary Clinton, and other terms relating to the election. The following graphic from the article shows how many of Trump's 19 interviews to date have included such references, and how far into the interview the first reference appears.

How far.jpeg

Hillary Clinton's name is the "winner", coming up in 17 interviews, appearing on average less than 40% of the way through!

Moreover, the Post found that the two interviews without Hillary references (coded as appearing 100% of the way through) came early in his term, whereas she was mentioned almost immediately in his recent July 19 interview with the New York Times.

How far Hillary.jpeg

Similar graphs are constructed for the other terms.

Links to the interviews themselves are provided at the end of the article. Quoting the beginning of the transcript of that last interview from the Times:

TRUMP: Hi fellas, how you doing?

BAKER: Good. Good. How was your lunch [with Republican senators]?

TRUMP: It was good. We are very close. It’s a tough — you know, health care. Look, Hillary Clinton worked eight years in the White House with her husband as president and having majorities and couldn’t get it done. Smart people, tough people — couldn’t get it done. Obama worked so hard... (emphasis added)

As the Post reported, he got though just 20 words before "Hillary." The caption for the second graphic says that the figures are based on "character analysis." This is not explicitly defined in the article, but the preceding suggests that it means word counts, calculating the number of words he spoke before the first "Hillary" divided by his total words in the interview.

Discussion

  1. From the first graphic, it appears that the terms that came up in many interviews also tended to come up early. Is this surprising? Can you think of another way to reveal this information?
  2. From the second graphic, consider distribution for the point at which "Hillary" first occurs. Does this square with headline? What is happening here?

Voter fraud and the birthday problem

This anti-voter-fraud program gets it wrong over 99 percent of the time. The GOP wants to take it nationwide.
by Christopher Ingraham, "Wonkblog", Washington Post, 20 July 2017

Throughout the 2016 campaign, candidate Trump warned that the election was being rigged. After the election, he complained that Hillary Clinton would not have won the popular vote without millions of illegal ballots. Such claims have cast a shadow over the recently convened Presidential Advisory Commission on Election Integrity, despite Vice President Pence's assurances that "this commission has no preconceived notions."

Kansas Secretary of State Kris Kobach is the vice-chairman of the commission. As described in the Post, he has advocated national implementation of Kansas program called Interstate Voter Registration Crosscheck, which seeks to identify people who may be voting in more than one location. Other states are invited to send their voter registration lists to Kansas, and Crosscheck will search for voters with matching first name, last name and date of birth. The idea is to remove duplicate registrations, though it is not exactly clear how this would be implemented.

Critics of the program argue that it creates many "false positives"; that is, different people with matching names and birthdays. From the article we read:

A statistical analysis of the program (One person, one vote: estimating the prevalence of double voting in U.S. presidential elections ) published earlier this year by researchers at Stanford, Harvard, University of Pennsylvania and Microsoft, for instance, found that Crosscheck “would eliminate about 200 registrations used to cast legitimate votes for every one registration used to cast a double vote.”

Ostensibly, Crosscheck appears to assume that a match on name and birthdate indicates a duplicate registration by the same person. Calculating the chance of such a match among different people is an application of a famous problem from probability. The Post cites a 2007 paper, Seeing double voting: An extension of the birthday problem. It is well-known that among 23 randomly selected birthdays (month and day), there is a better than even chance that at least two will match. With 180 people, the article reports that there is a 50% chance that two will match birthdates (month, day and year). There is a built-in function in R called qbirthday that implements such calculations. For example:

> qbirthday(prob=0.5, classes=365, coincident=2)
[1] 23
> qbirthday(prob=0.5, classes=365*65, coincident=2)
[1] 182

For the second calculation we assume that an individual has 65 years of voting eligibility. (It is also assumed in both calculations that all birthdays are equally likely. But if they are not, then coincidences are even more likely ).

For common names, this is a very real problem. For instance, the article reports that 282 William Smiths were registered in New Jersey in 2004. As an example of how such coincidences can accumulate, the "One person, one vote" paper found that In 2012 and 2014, the Crosscheck program found nearly 240,000 voter registrations in Iowa that matched the name and birthdate of a record in some other state.

Beyond these probabilistic worries, the article notes the mechanical issues integrating records across states and municipalities, with the challenges of missing data fields, transcription errors, and the like.

Submitted by Bill Peterson

Birthday cake bacteria

Coincidentally, on the subject of birthdays (not voting!), Paul Alper sent a link to the following paper:

Bacterial transfer associated with blowing out candles on a birthday cake
Journal of Food Research, Vol 6, No 4 (2017)

The abstract is reproduced below:

This study examined the potential spread of bacteria when blowing out candles on a birthday cake. Preliminary tests of blowing on nutrient agar indicated that bioaerosols in human breath expelled from the mouth may be a source of bacteria transferred to cake surfaces. To test aerosol transfer to cake, icing was spread evenly over foil then birthday candles were placed through the foil into a Styrofoam™ base. After consuming pizza, test subjects were asked to extinguish the candles by blowing. Icing samples were sterilely recovered then surface plated, to determine the level of bacterial contamination. Blowing out the candles over the icing surface resulted in 1400% more bacteria compared to icing not blown on. Due to the transfer of oral bacteria to icing by blowing out birthday candles, the transfer of bacteria and other microorganisms from the respiratory tract of a person blowing out candles to food consumed by others is likely. (Paul's emphasis)

As Paul notes, a number of questions immediately suggest themselves, not least of which is the elephant in the party hat: What's pizza got to do with it?

Discussion
What questions occur to you based on the abstract? To what extent are they dealt with in the full paper (5 pages).


Surprise ER bills

The company behind many surprise emergency room bills
Julie Creswell, Reed Abelson and Margot Sanger-Katz, "TheUpshot" blog, New York Times, 24 July 2017

The article reports on a disturbing trend in medical billing. In some cases, patients receiving emergency room care at hospitals in networks covered by their insurance can still get large bills after being treated by out-of-network doctors. A paper by researchers at Yale University found that about 22% of ER visits overall in the US incur out-of-network charges. However, as explained in the NYT article, such experiences are more prevalent in hospitals that used a company named EmCare to manage their ER staffing.

The article includes the following histogram, which provides a good illustration of a U-shaped distribution.

Emergency room.png

Rats, again!

De Blasio wants to dramatically reduce NYC’s rat population. Don’t hold your breath.
by Jonathan Auerbach, Slate, 21 July 2017

New York City mayor Bill DiBlasio has announced a $32 million plan to reduce the city's rat population. In Chance News 102, we described a creative capture-recapture experiment that Auerbach implemented to estimate the size of that population. His results cast serious doubt on the folk wisdom that the city had more rates than people.

Reducing the rat population sounds like a good idea. However, his Slate article, Auerbach questions the mayor's enthusiastic goals of a 70% reduction in select areas, which fits the pattern of to other impressive-sounding claims about improvements in homicide rates, violent crime and pedestrian fatalities. He worries that by responding to extreme events, the apparent improvements may be due to the regression effect. The article alluded to Galton's famous data on heritability of height, where he found that sons of taller men tended to be above average in height, though not by quite as much as their fathers. (The BMJ has a good tutorial on regression to the mean that gives more detail on Galton's findings; a followup piece gives further examples of the phenomenon.)

The Slate article provides a number of data graphics to illustrate the problem in the context of the mayor's initiatives. For example. reproduced below is analysis of the Action Plan for Neighborhood Safety, implemented in 2014. The leftmost panel shows the 5-year trend in the violent crime in 13 neighborhoods targeted by the program from 2011 through 2015. The drop in 2015 was cited as evidence of the success of the program.

NYC crime Slate.png

But numbers of violent crimes fluctuate from year to year. The next two panels show what happened in the 13 highest crime developments from 2013 and 2012, respectively. Of course, the mayor's program was not in force in those year. Yet In both cases, the high-crime developments saw a drop in crime the following year that was comparable in magnitude that was observed in the neighborhoods targeted by the program. This demonstrates that the progress attributed to the program could simply be a statistical artifact.

The article links to a paper entitled Do old fallacies ever die?, in which Nobel Prize-winning economist Milton Friedman wrote, "I suspect that the regression fallacy is the most common fallacy in the statistical analysis of economic data."

Discussion
The caption to the graphs shown above reads, "All three panels show increases from 2011 to the year in which the developments were selected, before finally reverting toward their 2011 levels by 2015 (emphasis added). What do you make of this last comment?

Submitted by Bill Peterson